1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaatttttcatctgatgaattacatgctactctacataattcactttatctgtgcctttgttaaccattgccacaattttattctactcctaagtcca...
species | Oryza sativa |
transcript | LOC_Os12g03190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAGCTAGAAAG GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTEST: gi|7273923|gb|AU083467.1|AU083467
genomic: TAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
EST: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTEST: gi|700649|gb|D46940.1|D46940
genomic: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
EST: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCCAGCATGGEST: gi|702505|gb|D48796.1|D48796
genomic: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATC-AGCATGG
EST: ATCCACGGTGATGATCTCAGTGGGATGGACGGAGCTAGGAAG GGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGNTCAACATGGNGA-TATEST: gi|86499082|gb|CI141715.1|CI141715
genomic: ATCCACG-TGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaattttt ... ttgaatgcagG-CATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATAT
EST: AGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTEST: gi|6481237|gb|AU065815.2|AU065815
genomic: AGAACCAGATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
EST: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAG GCAT-GATCT-AGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATTEST: gi|86539123|gb|CI179329.1|CI179329
genomic: ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
EST: ACGTAGCTAGAAAG GCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
genomic: ACGTAGCTAGAAAGgttaattttt ... ttgaatgcagGCATTGATCTTAGCTAGGCTTCTGGGGCAACGGATCAGCATGGAGAATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCACGTGATGATCTCAGTGGGATGGACGTAGCTAGAAAGgttaatttttcatctgatgaattacatgctactctacataattcactttatctgtgcctttgttaaccattgccacaattttattctactcctaagtcca
- - - - - - - - - - - GATGGA