1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGGTACCTCGCAGAGAAGACTAATACTACTAAACCCGGCCGTGGAAAATGTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtcccatggactgttttttttattggttactttcattctgtcatgtagacttaagcctataatgttttccaacaaaaacagtataattttaga...
species | Oryza sativa |
transcript | LOC_Os12g03060.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|33653555|gb|CF276169.1|CF276169
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|163926921|gb|EG715146.1|EG715146
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|33681633|gb|CF309872.1|CF309872
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|89178438|gb|CI015143.1|CI015143
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|86598271|gb|CI354888.1|CI354888
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|86834645|gb|CI340762.1|CI340762
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88278361|gb|CI399361.1|CI399361
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: TAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|58674334|gb|CK063020.1|CK063020
genomic: TAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88446415|gb|CI563245.1|CI563245
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: TTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|29687248|gb|CB683523.1|CB683523
genomic: TTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTTTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88278276|gb|CI399276.1|CI399276
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|86831384|gb|CI299442.1|CI299442
genomic: GCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTACAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATAEST: gi|88239235|gb|CI240397.1|CI240397
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|38475562|gb|CF959695.1|CF959695
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTGTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88582726|gb|CI700154.1|CI700154
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTACAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|33805224|gb|CF328489.1|CF328489
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAAAGTATGATGGGAEST: gi|88277877|gb|CI398679.1|CI398679
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATNTATGATGGGAEST: gi|87028733|gb|CI349452.1|CI349452
genomic: GGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: TGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88906025|gb|CI089611.1|CI089611
genomic: TGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88416649|gb|CI543550.1|CI543550
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: TGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88413203|gb|CI523764.1|CI523764
genomic: TGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: AGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|86418859|gb|CI053660.1|CI053660
genomic: AGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|29657294|gb|CB653569.1|CB653569
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|29618675|gb|CB623687.1|CB623687
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88291767|gb|CI539938.1|CI539938
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88995219|gb|CI036794.1|CI036794
genomic: GGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCNACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|38471525|gb|CF955656.1|CF955656
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGAEST: gi|88384390|gb|CI551316.1|CI551316
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
EST: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTT GGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
genomic: GTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtc ... tgatatgcagGGAATAGTGCTGCTAATCATCTTGATATCAGGACTCAAATGTATGATGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGTACCTCGCAGAGAAGACTAATACTACTAAACCCGGCCGTGGAAAATGTGATGGGGAGTGCTTAGTAAAATCAACTCTGCTAGAAGGAAGCTTTGTTgtaagttgtcccatggactgttttttttattggttactttcattctgtcatgtagacttaagcctataatgttttccaacaaaaacagtataattttaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa