1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGGGATTTTGTTCCAGCTATTTATGATACAACAGTAATTATTCCAAAAGATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgctaacttcttggatatctaatggcagaccaatcaagagagtgttgcagaactaaatattgaaatttgatgggtttcttttcactgttgaagtcttgcaaataaatatagatacatagtcataataaattgatttgatttgaaacaaatttccactccactgtttctctag
species | Oryza sativa |
transcript | LOC_Os11g41900.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|29639123|gb|CB644132.1|CB644132
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|29615790|gb|CB620802.1|CB620802
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCACGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|117217204|gb|CT845404.1|CT845404
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCACGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|86494086|gb|CI136719.1|CI136719
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: TGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|29639077|gb|CB644086.1|CB644086
genomic: TGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|112785295|gb|EE590405.1|EE590405
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|58601667|gb|CK012195.1|CK012195
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCACGCAATGAGTGAGATGCCAAAGTCAGAAEST: gi|4714815|gb|AU055932.1|AU055932
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
EST: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTG GTACATGTTCGCATGAAACGTCACGCAATGAGTGAGATGCCAAAGTCAGAA
genomic: ATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgc ... gtttctctagGTACATGTTCGCATGAAACGTCATGCAATGAGTGAGATGCCAAAGTCAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGGATTTTGTTCCAGCTATTTATGATACAACAGTAATTATTCCAAAAGATTCACCTCAACCAACAATGCTGCGGATTTTGAAAGGGCAATCTTCAGTGgtatgtttgctaacttcttggatatctaatggcagaccaatcaagagagtgttgcagaactaaatattgaaatttgatgggtttcttttcactgttgaagtcttgcaaataaatatagatacatagtcataataaattgatttgatttgaaacaaatttccactccactgtttctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC