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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCACAAAATGCCATAAATGAACTGAATGgtgagtctttttccatgtttgttgccatgcctcactagtcattaggttagttctagctacctgatcatttctgcttacttttcattgcttcag

Basic information

species Oryza sativa
transcript LOC_Os11g40510.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688359|gb|CK077046.1|CK077046
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58687280|gb|CK075967.1|CK075967
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|87006051|gb|CI289468.1|CI289468
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58602505|gb|CK013033.1|CK013033
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|33680119|gb|CF308358.1|CF308358
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|88572117|gb|CI663688.1|CI663688
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|218497207|gb|FG946437.1|FG946437
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGT
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCT-CGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGT
EST: gi|86905007|gb|CI289154.1|CI289154
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|88321854|gb|CI672999.1|CI672999
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58678674|gb|CK067361.1|CK067361
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58690866|gb|CK079553.1|CK079553
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58694246|gb|CK082933.1|CK082933
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|25797088|gb|CA753049.1|CA753049
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAAGGGT
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAA-GGGT
EST: gi|218500911|gb|FG960833.1|FG960833
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58597389|gb|CK007917.1|CK007917
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|325494350|gb|JG458874.1|JG458874
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58606512|gb|CK034545.1|CK034545
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|58601763|gb|CK012291.1|CK012291
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|86596642|gb|CI286555.1|CI286555
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
EST: gi|87004665|gb|CI300987.1|CI300987
EST:     GACGCACAAAATGCCATAAATGAACTGAATG                         GGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG
genomic: GACGCACAAAATGCCATAAATGAACTGAATGgtgagtcttt ... attgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTG