1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcctatctcaccttatttttcacaagtcttatgtatacatgacatttcaaactaatgcaaacttggtctcctttttatgcag
species | Oryza sativa |
transcript | LOC_Os11g34850.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAEST: gi|29683870|gb|CB680145.1|CB680145
genomic: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
EST: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAEST: gi|88508537|gb|CI436043.1|CI436043
genomic: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
EST: TTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAEST: gi|29683869|gb|CB680144.1|CB680144
genomic: TTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
EST: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAEST: gi|29683929|gb|CB680204.1|CB680204
genomic: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
EST: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAAEST: gi|88832446|gb|CI019387.1|CI019387
genomic: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
EST: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTG GTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
genomic: GTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcct ... ttttatgcagGTTGGTTCTAGTGACAGTGTAATGGGGATCTCGAAGGATCTTGCAAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGATGAGAGGGTAGTATTTAGGGTCGCTGGTGGCTTGTTGCTTGAACATCCATTGACATTACCATTTGTTGAAGCAGTGgttagtgcctatctcaccttatttttcacaagtcttatgtatacatgacatttcaaactaatgcaaacttggtctcctttttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC