1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGTGAGCTCCTTGGGGTTGATCCAGCTGATGTGGACATAATGATGGGCACTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttcagagcacttctttcagttgcttgaattgaaaatttactgattcaccttgcttgaactctcag
species | Oryza sativa |
transcript | LOC_Os11g31640.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGEST: gi|29628852|gb|CB633863.1|CB633863
genomic: CTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATG
EST: GTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCTCATATTTATGCTACCEST: gi|29671691|gb|CB667966.1|CB667966
genomic: GTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
EST: TATATTGCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACCEST: gi|29675002|gb|CB671277.1|CB671277
genomic: TATATTGCAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
EST: TCATTTGGATCATGTGGTGG--ATA-TGNCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACCEST: gi|29615692|gb|CB620704.1|CB620704
genomic: TCATTTGGATCATGTGGTGGATATATTG-CAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
EST: CTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACCEST: gi|29672757|gb|CB669032.1|CB669032
genomic: CTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
EST: TAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAG GAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
genomic: TAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttc ... gaactctcagGAGATAATTCAGCACCTGAAGCTTAGCTGCCCAGCGCATATTTATGCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGCTCCTTGGGGTTGATCCAGCTGATGTGGACATAATGATGGGCACTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttcagagcacttctttcagttgcttgaattgaaaatttactgattcaccttgcttgaactctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA