1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctttcttatgtcttctatgagcacaaaactaccagactacaacacacatggttattaccagtatctgttaccattgtaggtagcatgccatac...
species | Oryza sativa |
transcript | LOC_Os11g06760.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGGEST: gi|13818900|gb|AB060279.1|AB060279
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
EST: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGACTATGGCGAGGAGTGGGAAGAGGEST: gi|66916064|gb|CX102912.1|CX102912
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
EST: CGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGGEST: gi|29677610|gb|CB673885.1|CB673885
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
EST: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGGEST: gi|38474027|gb|CF958159.1|CF958159
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
EST: CGCTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGGEST: gi|8527776|gb|AU092591.1|AU092591
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
EST: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAG CCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
genomic: CACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctt ... aaatgtgcagCCATGAGCAATGGTCCCCCCGCTTATGATTATGGCGAGGAGTGGGAAGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCTTTCCCCACTAATCGTGGAAGAGGCCGTGGTGGTGGCAGAAGAGGCAGGGGCAGAGgtatcctctttcttatgtcttctatgagcacaaaactaccagactacaacacacatggttattaccagtatctgttaccattgtaggtagcatgccatac
- - - - - - - - - TGGAAG
- - - - - - - - - - GGAAGA
- - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - AAGAGG