1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTCTTGACAAATGCCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTGgtaggggtggtatttaccattctttttgtagatatcttttgtcgtactaatgttgtagcataatacatggagccaccttattcatagtactaattgtgatattgtcatatag
species | Oryza sativa |
transcript | LOC_Os11g05700.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTG TTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTGTTEST: gi|29687974|gb|CB684249.1|CB684249
genomic: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTGgtaggggtgg ... tgtcatatagTTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTGTT
EST: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTG TTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTGTTEST: gi|33795959|gb|CF323847.1|CF323847
genomic: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTGgtaggggtgg ... tgtcatatagTTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTGTT
EST: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTG TTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTG
genomic: CCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTGgtaggggtgg ... tgtcatatagTTGTGGAAGATGGGTCGAACTGGAGCATGGGTCAAAGGCAGCTGTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGACAAATGCCAACTTCTTGAGACTGTCCAAGAGAAGGAACATGGATTGGATTCACTTGgtaggggtggtatttaccattctttttgtagatatcttttgtcgtactaatgttgtagcataatacatggagccaccttattcatagtactaattgtgatattgtcatatag
- - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - CATGGA