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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAGgtatttttcctattgaaaaccggttcttcagatttaatgagaaatattatgcaattgtaaatgtgtgattgcaaattgtgcag

Basic information

species Oryza sativa
transcript LOC_Os11g04030.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680054|gb|CB676329.1|CB676329
EST:     CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAG                         ATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
genomic: CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAGgtatttttcc ... aattgtgcagATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
EST: gi|29674310|gb|CB670585.1|CB670585
EST:     CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAG                         ATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTT
genomic: CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAGgtatttttcc ... aattgtgcagATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTT
EST: gi|29644401|gb|CB649408.1|CB649408
EST:     CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAG                         ATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
genomic: CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAGgtatttttcc ... aattgtgcagATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
EST: gi|88411903|gb|CI571395.1|CI571395
EST:     CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAG                         ATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
genomic: CCTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGGAGgtatttttcc ... aattgtgcagATTTCCATACCTTCTACCCTGTCTTTGTATATCACTTTTTGCTCTCTTGGT
EST: gi|29678070|gb|CB674345.1|CB674345
EST:     CTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGGNGAG                         ATTTCCATACCTTCTACCCTGTCTTTGTATATCAC
genomic: CTGTCAAACAATATCCTCATCTTTTTCATGAAAAGTCAATATTTGG-GAGgtatttttcc ... aattgtgcagATTTCCATACCTTCTACCCTGTCTTTGTATATCAC