1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATAGTAGTCATGGTGATGGTGGCCTTGGCTGTTGGATCTGATCAAATATCCACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtgttagatctagtctaggaaattgtttcttttgaacaaccttttccaaatttgtctattttactacacag
species | Oryza sativa |
transcript | LOC_Os11g03900.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCEST: gi|33689236|gb|CF317475.1|CF317475
genomic: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGC
EST: CCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCTEST: gi|27548069|gb|CA766086.2|CA766086
genomic: CCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCT
EST: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCGAGGTTTTAAAACTTGATACTGAGATGAAGGAACTTGCCTEST: gi|58591908|gb|CF990216.1|CF990216
genomic: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCT
EST: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCGAGGTTGGAAAACTTGATACCGAGATGAAGGAACTTGCCTEST: gi|33794922|gb|CF323341.1|CF323341
genomic: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCT
EST: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCGAGGTTTTAAAACTTGATACCGAGATGAAGGAACTTTCCTEST: gi|112785889|gb|EE591621.1|EE591621
genomic: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCT
EST: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAA GCAATGTCAGCGAGGTTTTAAAACTTGATACCGAGATGAAGGAACTTGCCT
genomic: CACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtg ... tactacacagGCAATGTCAGCGAGGTTTTCAAACTTGATACTGAGATGAAGGAACTTGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTAGTCATGGTGATGGTGGCCTTGGCTGTTGGATCTGATCAAATATCCACCCAAGTTAGACGTCAAGCTATCATCAGTGGTCTTTCCAATCTTCCAAgtatgtcgtgttagatctagtctaggaaattgtttcttttgaacaaccttttccaaatttgtctattttactacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT