1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACCATCCCACTCCAACAAGAGCAGAAGTTTCTGATATAGCAATTGCAGTTCGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttcaacctgacacaggttactttttgtttatgttcctccatgtgcatccaagaaatttatttctttaagctcttgctgtgggtgcatagaattctgctttccaattagacttaccttgattgtgcatcttactgtgtttag
species | Oryza sativa |
transcript | LOC_Os10g42100.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|29614922|gb|CB619935.1|CB619935
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: GATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|58669868|gb|CK058554.1|CK058554
genomic: GATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|88333381|gb|CI642418.1|CI642418
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|66923995|gb|CX110843.1|CX110843
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|218504586|gb|FG948260.1|FG948260
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAEST: gi|29628928|gb|CB633939.1|CB633939
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
EST: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAA GTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
genomic: CGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttc ... ctgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATCCCACTCCAACAAGAGCAGAAGTTTCTGATATAGCAATTGCAGTTCGTGAAGGTTCTGATGCCATCATGCTGTCTGGTGAAACTGCCCATGGAAAgtaagatttcaacctgacacaggttactttttgtttatgttcctccatgtgcatccaagaaatttatttctttaagctcttgctgtgggtgcatagaattctgctttccaattagacttaccttgattgtgcatcttactgtgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA