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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATAAAACCAGGATGCTGTACCAGATGTCCCTCAACTTTGCTCCCTGGCTCAAGCACATCCCTTTCATGCACATACTATGGTCACATTTTGGTGAGAAGgcaagtctcaaaattttcagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcag

Basic information

species Oryza sativa
transcript LOC_Os10g41760.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g41760.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G020309_T01 (Zea mays), 5'ss of exon 2
GAATAAAACCAGGATGCTGTACCAGATGTCCCTCAACTTTGCTCCCTGGCTCAAGCACATCCCTTTCATGCACATACTATGGTCACATTTTGGTGAGAAGgcaagtctcaaaatttt-cagagcaacttggtagtcactgatctccatgtcatctcatgttagcttgcaacttactacagtaaagttttttccgctgtttcacaccgtcgtctataagacatcaatggtaatcttgtatgatcttctgcag
||| ||||| ||| |||||||||||||||| ||  |||| ||||| |||||||||||| | ||  |||||||| | || |||||||||||    ||||||||| |||    ||| |   | || || ||  |||  | |  | |  |   |  ||    || | |   ||  |  |   |  || | |  |   || ||       ||| | |  |                                   
GAACAAAACTAGGCTGCTGTACCAGATGTCGCTAGACTTCGCTCCGTGGCTCAAGCACGTACCGCTCATGCACCTGCTGTGGTCACATTTCACAGAGAAGgcacgtcagtcaatgtgataaagtaattta-taggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaatctaatat-cttttcatggtggtcttgtgcag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180108|gb|CI044387.1|CI044387
EST:     TCAAGCACATCCCTTTCATGCACATACTATGGTCACATTTTGGTGAGAAG                         GTCTTGAATGAGGACCTACGGCTTGTGCTTGGGCAGCAAGAGCGGATGATA
genomic: TCAAGCACATCCCTTTCATGCACATACTATGGTCACATTTTGGTGAGAAGgcaagtctca ... tcttctgcagGTCTTGAATGAGGACCTACGGCTTGTGCTTGGGCAGCAAGAGCGGATGATA