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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGATGGTGTGAACATTTCGGCTAATGCAGTCCATCCTGGTGTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATGgtaattcccaaaccattcagaacaaaattttggagtgtaattagaattttggaacaattagtacttgaagaagcacatactccataatgccaatttaggatgatccccaaccattttgattactggtaaacacaacgaacaatgctgcttataaatataatatttcttaactgttcttgtgcattggttctctcttgcag

Basic information

species Oryza sativa
transcript LOC_Os10g40020.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88967927|gb|CI098169.1|CI098169
EST:     AACCAACCTGTTCAGGCACAGGACTATTATAAATG                         CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG
genomic: AACCAACCTGTTCAGGCACAGGACTATTATAAATGgtaattccca ... tctcttgcagCTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG
EST: gi|86433247|gb|CI093590.1|CI093590
EST:     GTTGTTACAACCAACCTGTTCAGGCACAGGAGTATTATAAATG                         CTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG
genomic: GTTGTTACAACCAACCTGTTCAGGCACAGGACTATTATAAATGgtaattccca ... tctcttgcagCTCTAGTGAAGTCCATTGGAAGATTCGTACACAAAACTGTAGAACAG