1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggctgtattatttcttctttatcatgagaccttcaatgttctaaaattaccacttttcatgtagttcattcatcctctgctcgttatcattttccttcttgaaacatctgcatggttattgtttcacag
species | Oryza sativa |
transcript | LOC_Os10g39670.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|11025879|gb|AU162480.1|AU162480
genomic: AATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|218489546|gb|FG966243.1|FG966243
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|569871|gb|D40720.1|D40720
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGGTGGGEST: gi|88313844|gb|CI597475.1|CI597475
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATG-TGGG
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|25803097|gb|CA759058.1|CA759058
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|29663195|gb|CB659470.1|CB659470
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGCEST: gi|66918229|gb|CX105077.1|CX105077
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
EST: TTGCATTTCGAGACCAAAATTTCAAGCCAGCCATAGATTGTTACACTCAG TTTGTTGATGTGGGGACCATGGTGTCGCCAACTGTATATGCCAGACGGAGC
genomic: TTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggct ... tgtttcacagTTTGTTGATGTGGGGACAATGGTGTCGCCAACTGTATATGCCAGACGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGACTCAACAGATGAGAGATATGTTGGATGCTAGGAAACGTGGTGATTTTGCATTTCGAGACAAAAATTTCAAGCAAGCCATAGATTGTTACACTCAGgtaggaggctgtattatttcttctttatcatgagaccttcaatgttctaaaattaccacttttcatgtagttcattcatcctctgctcgttatcattttccttcttgaaacatctgcatggttattgtttcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG