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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGACTTCCAAATGAAATGGGCCTTTGAAACTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgattgcctgactagctattctgtgtcttttagcatggattattgccttcccaacttcatattattgtttgttgcgcttgtcatatccaatag

Basic information

species Oryza sativa
transcript LOC_Os10g35960.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G085747_T02 (Zea mays), 5'ss of exon 8
TTTGAAGACTTCCAAATGAAATGGGCCTTTGAAACTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgattgcctgactagctattctgtgtcttttagcatggattattgccttcccaacttcatat--tattgtttgttgcgcttgtcatatccaatag--
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||     ||||  ||||  ||   || |       |   ||  ||  |||  || ||||  |||||||||  | |||| || |||  || |   
TTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGGAACCGATTTTGCATGTTCAATGATGACGTACAGgtatcctgattcttaaacta-ttattacgtaatttattctggaaagctttttctgaccagttttatatattattgtttgacgggcttatcctatttaaaatag

upper sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G085747_T05 (Zea mays), 5'ss of exon 7
----------------TTTGAAGACTTCCAAATGAAATGGGCCTTTGAAACTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgattgcctgactagctattctgtgtcttttagcatggattattgccttcccaacttcatat--tattgtttgttgcgcttgtcatatccaatag--
                |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||  |||||     ||||  ||||  ||   || |       |   ||  ||  |||  || ||||  |||||||||  | |||| || |||  || |   
AGTGATAAAATCACAGTTTGAAGACTTCCAAATGAAATGGGCCTTTGAGACTCTTCAGAGGTATCGGAACCGATTTTGCATGTTCAATGATGACGTACAGgtatcctgattcttaaacta-ttattacgtaatttattctggaaagctttttctgaccagttttatatattattgtttgacgggcttatcctatttaaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58687567|gb|CK076254.1|CK076254
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTT
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTT
EST: gi|58673493|gb|CK062179.1|CK062179
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|58665242|gb|CK053928.1|CK053928
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|58694574|gb|CK083261.1|CK083261
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|58659006|gb|CK047686.1|CK047686
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|29664101|gb|CB660376.1|CB660376
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|29624067|gb|CB629078.1|CB629078
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|29656255|gb|CB652530.1|CB652530
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCANGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTG
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTG
EST: gi|29687359|gb|CB683634.1|CB683634
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|58604291|gb|CK014819.1|CK014819
EST:     CTCTTCAGAGGTATCGTAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|29624065|gb|CB629076.1|CB629076
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
EST: gi|29678813|gb|CB675088.1|CB675088
EST:     CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAG                         GGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA
genomic: CTCTTCAGAGGTATCGGAACCGATTTTGTATGTTCAATGATGACGTGCAGgtattttgat ... tatccaatagGGGACAGCAGGAGTTGCTCTAGCTGGCCTACTTGGAGCTGTGAGAGCACAA