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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAAGTGATATCAAAGTGTCAGTCTGTACTTTTGGCTTTGATATTCTTTACATCAATGGCAAGCCTCTTCTCCAGGAACAACTGAAAGTTCGACGAGAGgtattgttttttctgtactgttatgagctgtattgtttaagttcatctatccattgctatcccatagggcacgttttaacaaagccatggctgcagtttt...

Basic information

species Oryza sativa
transcript LOC_Os10g34750.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g34750.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G071304_T01 (Zea mays), 5'ss of exon 8
CATAAGTGATATCAAAGTGTCAGTCTGTACTTTTGGCTTTGATATTCTTTACATCAATGGCAAGCCTCTTCTCCAGGAACAACTGAAAGTTCGACGAGAGgtattgttttttctgtactgttatgagctgtattgtttaagttcatctatccattgctatcccatagggcacgtttta-acaaagccatggctgcagtttt--
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CATAAATGACATCAAAGTTTCAGTCTGTACTTTTGGCTTCGATATTCTTTACATAAACGGGAAACCTCTTCTCCAGGAACAACTCAAAATTCGTCGAGAGgtactctacttt-tgccccgt--agattcttaatgtacaataaataccattttattctgctactgaaaacattatttatgctatcacatggttgcggtcaatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3763423|gb|AU030175.1|AU030175
EST:     GAACAACTGAAAGTTCGACGAGAG                         CATCTTTACAACTCCTTTGAGGAAGTACCAGGTGTTTTTCAATTGGCAACT
genomic: GAACAACTGAAAGTTCGACGAGAGgtattgtttt ... atgcttgcagCATCTTTACAACTCCTTTGAGGAAGTACCAGGTGTTTTTCAATTGGCAACT