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CCGGTACAAGATCAATTCTGAACGTGACAATTTTCAAGGGAACTCAAGAAGAAAGAGGCTTGCATCAGTTAAGAGTGATCCAATATCTGATGCTTTTGAGgtaaacttcagttattttttgcattgtgccagctactcgatccctccagttcaaaatgtaaggcatataaattttaccttcatagtacagagccacataa...
species | Oryza sativa |
transcript | LOC_Os10g33275.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGAGTGATCCAATATCTGATGCTTTTGAG GATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACTAGGCAAEST: gi|86877298|gb|CI311526.1|CI311526
genomic: AGAGTGATCCAATATCTGATGCTTTTGAGgtaaacttca ... ttttttccagGATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACTAGGCAA
EST: GAAAGAGGCTTGCATCAGTTAAGAGTGATCCAATATCTGATGCTTTTGAG GATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACTAGGCAAEST: gi|58667716|gb|CK056402.1|CK056402
genomic: GAAAGAGGCTTGCATCAGTTAAGAGTGATCCAATATCTGATGCTTTTGAGgtaaacttca ... ttttttccagGATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACTAGGCAA
EST: GTTAAGAGTGATCCAATATCTGATGCTTTTGAG GATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACTTAGGCA
genomic: GTTAAGAGTGATCCAATATCTGATGCTTTTGAGgtaaacttca ... ttttttccagGATGTTGACATTTATAAGGAATATGGAAATTACAGCGTTGCAACT-AGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGTACAAGATCAATTCTGAACGTGACAATTTTCAAGGGAACTCAAGAAGAAAGAGGCTTGCATCAGTTAAGAGTGATCCAATATCTGATGCTTTTGAGgtaaacttcagttattttttgcattgtgccagctactcgatccctccagttcaaaatgtaaggcatataaattttaccttcatagtacagagccacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG