1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgtttgctttcataaaatagttgtatattgtggtggtgctactgattttcttgctataactggtcaacatcttgccttgcacag
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCNAGGCATTGEST: gi|58692466|gb|CK081153.1|CK081153
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGEST: gi|58663314|gb|CK052000.1|CK052000
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGEST: gi|568031|gb|D38866.1|D38866
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGEST: gi|86851054|gb|CI311272.1|CI311272
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTGEST: gi|163928826|gb|EG709729.1|EG709729
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
EST: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAG AAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
genomic: AGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgttt ... ccttgcacagAAGCAAAGGCCTCTGCTGATTGTTGCTGAAGATGTAGAGAGCGAGGCATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTGGATGACCCCTTGATCCTGATACATGACAAGAAGGTTTCGAACCTGCATGCAGTAGTTAAAGTCTTGGAGTTGGCTCTGAAGgtatgtgtttgctttcataaaatagttgtatattgtggtggtgctactgattttcttgctataactggtcaacatcttgccttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG