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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttgaactgattaacttcttttctgaatgctctctgctgcag

Basic information

species Oryza sativa
transcript LOC_Os09g37590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G168614_T02 (Zea mays), 5'ss of exon 5
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatag------agcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttgaactgattaacttcttttctgaatgctctctgctgcag
|||||||||||||| || |||||||| || || ||||| || |||||||||||| || ||||||||| |||||||||||||||||||||||||   |   |        ||||| ||| ||||  |||  || ||| | |||      ||  |  | ||  |  |  | ||| |||  | |  | |||||| |         
ATAGTTGATGCTGTAGTTGCTGCACGTATATTGAATGCTACACTTGTTGTTCCCAAACTGGATCAAACATCTTTCTGGAAAGATTCAAGgtatgcgatagtcaccagtcagcacttcccaattc-aatcgataatcttttat---catttataggtgttcat--atttaatttactcttgtattcaatgctttag-------

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA14G00520.1 (Glycine max), 5'ss of exon 4
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttgaactgattaacttcttttctgaatgctctctgctgcag
|||||||||||||| || ||||||    |||| ||||| || ||||||||||| || |||||||| |  ||||||||||||||  | |||| |              | |  ||||  |   | ||  |  | |  |    | |    |   |   | || |  |   ||  |||| || |               
ATAGTTGATGCTGTGGTGGCTGCATATCTTTTGAATGCTACCCTTGTTGTTCCAGAGTTGGATCATACTTCTTTCTGGAAAGACACCAGgtctgtctttgc------cttgtaaatcatgtatgatacttttattggaagcaatattcagggtctcttaatttgtgtgctatttttttgcag--------------

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA06G02110.1 (Glycine max), 5'ss of exon 4
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaattttaattcatgatcctctatgtgtgattgcatattttagttg---aactgattaacttcttttctgaatgctctctgct----gcag
||    ||||||||||| ||||| || ||||| ||||| || ||||| |||||  ||||||||||| |||||||||||||||| || ||||  |    ||       |    |     | |    ||        | ||  |||| | |||| || ||   | | || ||   |    |||  |    || ||||    ||||
ATTACAGATGCTGTTGTTGCTGCGCGAATTTTGAATGCTACTCTTGTAGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGACTCTAGgt-cagttacaatagttgcacagattgcctgagcggtgtctgcacttttgctattgta-atttgaggtggttatcagagtactgtgaaatcttgacatactttgctttttgcag

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA04G02010.1 (Glycine max), 5'ss of exon 5
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcatagagcacctccaaat-tttaattcatgatcctctatgtgtgattgcatattttagttg--aactgattaacttcttttctgaatgctctctgct----gcag
||    ||||||||||| |||||||| ||||| ||||| || ||||| |||||  ||||||||||| ||||||||||||||||||| ||||  |    || | ||   | |  | |   | |    ||        | ||  ||||||  |||  || |  | |||| ||   |    | |  |    || ||||    ||||
ATTACGGATGCTGTTGTTGCTGCACGAATTTTGAATGCTACTCTTGTGGTTCCAAAATTGGATCAACGATCTTTCTGGAAAGATTCTAGgt-cagtcaca-acagtggcacagattgcctgagcggtgtctgcacttttgctattgcaattttatgtggttatctgagtattgtgaaatgttgacatactttgctttttgcag

upper sequence: LOC_Os09g37590.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv18s0001g00100.t01 (Vitis vinifera), 5'ss of exon 5
ATAGTTGATGCTGTTGTCGCTGCACGCATTTTAAATGCAACGCTTGTTGTTCCCGAATTGGATCAAAGATCTTTCTGGAAAGATTCAAGgtataaaagcata-gagcacctccaaatt-ttaattcatgatcctctatgtgtgattgcatatttt----agttgaa-ctgattaacttcttttctgaatgctctctgctg-cag-----------------------
|||  |||||||||||||||||| |||||||||||||| || ||||| |||||  || ||||||| |  || || ||||  ||| | ||||     |    | |||||  | |    |  ||  |  |     | ||| | |  |||    || |    | |  || || |  ||   | | |     || | || | |  ||                        
ATAACTGATGCTGTTGTCGCTGCCCGCATTTTAAATGCTACTCTTGTCGTTCCAAAACTGGATCAGAAGTCCTTTTGGAGGGATGCTAGgttagtcattgaatgagcatatgcgttctgctacctttttgcaatttatattttgttgttggttcttagtattcaaatcttaaaaagagcatcttgctgtgatatcagttaacaaatttgttactctgtcttctgcag