Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag

Basic information

species Oryza sativa
transcript LOC_Os09g36450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G852968_T03 (Zea mays), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
||||||| ||||||||||| ||||| ||||||||||||||||| ||||| || || || ||||||||||||||||| |||||||||||  |||||||| ||| ||| |   | | |  ||  |   | | ||    |  |      | | | |||    ||||  |     ||  |  ||||   |||                
GTTCTGTGAATGCAGCCAACTGTGCAGAGCTAGCAAAGAAAGAGGATATCGATGGTTTTCTTGTTGGTGGTGCCTCCTTGAAGgtatggcaaattaacctcaaatctttgtacataatctcctttgtcctgtaccttctattgtcagtagctgctgcc-tgtagctc----ttaaagctcatcttgca----------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G852968_T02 (Zea mays), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
||||||| ||||||||||| ||||| ||||||||||                                                                                                                                                                        
GTTCTGTGAATGCAGCCAACTGTGCAGAGCTAGCAa------------------------------------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G002807_T01 (Zea mays), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttg---attgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||  ||| |||| ||| | | |   ||     ||||||    | || |   |||  | |   | || |  || |||   | ||   |  ||  ||||                        
GTTCTGTGAATGCAGCCAACTGTGCGGAGCTAGCAAAGAAAGAAGATATTGATGGTTTTCTTGTTGGTGGTGCCTCTTTGAAGgtatggcaaactaacctcaaacctttgtattacttctgttgtcagtagctgccgtctgtagctctttaaactcctcttgca-actttcatcatgcgtttcc-----------------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G852968_T02 (Zea mays), 5'ss of exon 9
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
                                    ||||||| ||||| || || || ||||||||||||||||| |||||||||||  |||||||| ||| ||| |   | | |  ||  |   | | ||    |  |      | | | |||    ||||  |     ||  |  ||||   |||                
------------------------------------AGAAAGAGGATATCGATGGTTTTCTTGTTGGTGGTGCCTCCTTGAAGgtatggcaaattaacctcaaatctttgtacataatctcctttgtcctgtaccttctattgtcagtagctgctgcc-tgtagctc----ttaaagctcatcttgca----------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA19G36990.1 (Glycine max), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
| |||||||||| ||  ||  |||| |||||||||||| ||||||||||||| || || || ||||| ||||| || || ||||||       |   ||  || |  |  |  | ||   |   |     | |||    |||  | |       |    | || |||   | |  || |  ||  |   ||             
GGTCTGTAAATGGAGGGAACAGTGCTGAGCTAGCAAAGCAAGAAGATATTGATGGATTTCTCGTTGGAGGTGCTTCATTAAAGgtacatggtttcttcaaaatttgtttgaccaaagtgagcaaagcat-gagttaaggaactcaggttattagttacatatacttgacaagttgatcttgttgaggtgcag------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA13G20930.1 (Glycine max), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatg---ataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccg--ctattgtgtaattgtgtattg-tatttcattacgcaacattccgttttgcag
| ||||||||||||  |||  |||| ||||| |||||| ||||||||||||| || || |||||||||||||| || || ||||||     |    |||     |  | ||   |       ||||   | ||  |   ||  |  ||||||| ||    ||||| || |  ||| ||| | |||   |   ||                
GATCTGTAAATGCAAGCAACAGTGCTGAGCTTGCAAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacacacggtttattcaaagtttctttgaccagatgtgtttcattcctagagtttgta--aatgaactcgaatgattgtttattaatgtgttgattttttgctgtacag---------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA10G06740.1 (Glycine max), 5'ss of exon 8
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctg-ttgattgcc-gtgttcttaaaccaatgaacccgctattgtgtaattgtgtattg-tatttcattacgcaacattccgttttgcag
| |||||||||||   |||  |||| ||||| || ||| ||||||||||||| || || |||||||||||||| || || ||||||    |  |   ||  |  || |  | || |   || || ||| |  | |||  ||||  ||   ||     | ||| || |  ||||||| | |||   |   ||                
GGTCTGTAAATGCGAGCAACAGTGCTGAGCTCGCGAAGCAAGAAGATATTGATGGATTTCTTGTTGGTGGTGCTTCATTAAAGgtacacgatttattcacaacttctttgactagaatgtgcttcattcctagagtttgtaaatgaac--acgaatgaatgtttactgatgtattgattttttgctgtacag---------------

upper sequence: LOC_Os09g36450.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT2G21170.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag
||||||| |||| || |||  |||| ||||| || ||  ||||||| ||||| || || ||||||||||||||||| |||||||||    || | ||  | | | | | |   | |   |||||||     |     |||| ||    || | |   | |   |||||| | | ||                            
GTTCTGTCAATGGAGGCAACAGTGCAGAGCTTGCCAAAGAAGAAGACATTGATGGATTTCTTGTTGGTGGTGCCTCCTTGAAGgta---aaagtaaagtttagacctttatggatatgttgttgatga--atagaagtaaagcagctcacactcaccttt---attgtg-actctag---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88513890|gb|CI441396.1|CI441396
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|8956697|gb|BE230372.1|BE230372
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86250549|gb|CI003667.1|CI003667
EST:     CAAAGAAAGAAGATATGGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88221717|gb|CI221673.1|CI221673
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29645954|gb|CB650961.1|CB650961
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88847813|gb|CI005999.1|CI005999
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86483625|gb|CI126258.1|CI126258
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29678932|gb|CB675207.1|CB675207
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29641345|gb|CB646352.1|CB646352
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|89170995|gb|CI040272.1|CI040272
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|15008276|gb|AU222664.1|AU222664
EST:     CAAAGAAAGAAGATATTGCCGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88959672|gb|CI002282.1|CI002282
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|89168489|gb|CI038843.1|CI038843
EST:     CCAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|12623265|gb|AU173478.1|AU173478
EST:     CAAAGAAAGAAGATATTGNCGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|7274001|gb|AU083545.1|AU083545
EST:     GAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: GAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86527746|gb|CI167952.1|CI167952
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88844760|gb|CI021335.1|CI021335
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88993022|gb|CI035984.1|CI035984
EST:     CGAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88988778|gb|CI039169.1|CI039169
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88841027|gb|CI000989.1|CI000989
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88904311|gb|CI002044.1|CI002044
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88972946|gb|CI019565.1|CI019565
EST:     ACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: ACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88458867|gb|CI555548.1|CI555548
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88966061|gb|CI012937.1|CI012937
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|58031138|gb|CX728681.1|CX728681
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86522945|gb|CI163151.1|CI163151
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86524266|gb|CI164472.1|CI164472
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29638544|gb|CB643553.1|CB643553
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86250560|gb|CI003678.1|CI003678
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88215257|gb|CI215106.1|CI215106
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|7274002|gb|AU083546.1|AU083546
EST:     AAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: AAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88216584|gb|CI214684.1|CI214684
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATGATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88221951|gb|CI221907.1|CI221907
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|87020131|gb|CI277863.1|CI277863
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88989919|gb|CI018796.1|CI018796
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88221701|gb|CI221657.1|CI221657
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|66919184|gb|CX106032.1|CX106032
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86539832|gb|CI180038.1|CI180038
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATGATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29686793|gb|CB683068.1|CB683068
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88224544|gb|CI222724.1|CI222724
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29637218|gb|CB642227.1|CB642227
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|25802919|gb|CA758880.1|CA758880
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86528283|gb|CI168489.1|CI168489
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86842390|gb|CI335282.1|CI335282
EST:     AAGAAAGAAGATAGTTGACGGCTTCCTTTTTGGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: AAGAAAGAAGATA-TTGACGGCTTCCTTGTT-GGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|29628219|gb|CB633230.1|CB633230
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|88849160|gb|CI087682.1|CI087682
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
EST: gi|86505521|gb|CI148154.1|CI148154
EST:     CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAG                         GGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA
genomic: CAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 52 (downstream exon)
Score: 55

GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaa ... cgttttgcagGGTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCAGCCTGATGTAACCCTTCTGTAGAAATAAATGACCCAGAGGCAGCGAGAC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGgtatgataaattaacatcatatcctgaaatacagcctgttgattgccgtgttcttaaaccaatgaacccgctattgtgtaattgtgtattgtatttcattacgcaacattccgttttgcag

- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG