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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTGAACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatcaagtgcaaagtgtgataattgttctaacagctatctatggcataatcttttcag

Basic information

species Oryza sativa
transcript LOC_Os09g36180.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G379577_T01 (Zea mays), 5'ss of exon 7
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGT---GAACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatcaagtgcaaagtgtgat-------aattgttc-taacagctatctatggcataatcttttcag
    || || || ||||||||| | ||||| || ||||||||||||||||| |||||||||||||| ||||||||   |||||||||||||||||||||||||||| ||||   | |  ||||| |||| |    | |   ||       | | |||| |||||   || | ||| ||   ||||||||
---TGAAAATTTAGAAAATCCAAATCTCTATCACTATGCACTTTTCTCAGATAATGTCTTGGCAGCTTCTGTTGTTGTGAACTCAACCATCATGAATGCTAAGgtattttc-catgcacttttagtcaattattcaattgcattcctcaaagtagttcctaacattgatgtttggaatgtccttttcag

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G386971_T01 (Zea mays), 5'ss of exon 7
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGT---GAACTCAACCATCATGAATGCTAAGgtagttt-cgtcttccttt------ttaatcaagtgcaaagtgtgataattgttctaacagctatctatggcataatcttttcag
    || || || ||||| ||| | ||||| || |||||||||||||| || ||||| |||||||| ||||||||   |||||||||||| ||||||||||||||| ||| ||| | | |||      ||| |||| ||||       |      ||||||  |  || | ||||||    |||||||
---TGAAAATTTAGAAAACCCAAATCTCTATCACTATGCACTTTTCTCTGATAATGTTTTGGCAGCCTCTGTTGTTGTGAACTCAACCATAATGAATGCTAAGgtattttgcgtgtacttttagtcaattattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcag

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA07G08910.1 (Glycine max), 5'ss of exon 5
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTG---AACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatca----agtgca-------aagtgtgataattgttctaacagctatctatggcataatcttttcag------------
    ||||| ||||| |||||    || || || || ||||| |||||||||||||||||||| |||||||||||    |||||||| || |||||||| |||||   || | ||  |||||||| ||    |||          |||||   |  ||  | | | || | |  |    ||  |   || |             
---TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCAAAGgtgacttggactgtctttttaaccataccagtatgtgtgtgcaagtgcattgtttccttttatagat-tgcaaataatggtgccttgaaggagcaccaaaa

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA09G40260.1 (Glycine max), 5'ss of exon 8
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTG---AACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttt--taatcaagtgcaaa-gtgtg-------ataattgttctaacagctatctatggcataatcttttcag--------------------------------------------------------------------------------------------------------------
    ||||| ||||| |||||    ||||| |||||||| || ||||| |||||||||||||| |||||||||||    |||||||| ||  ||||||| |||||   ||   |   |||||   |  | ||||   | |||         |||  | ||||   |  ||  |   | ||||| | | |                                                                                                                
---TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTGTGAATGCAAAGgtgacttaaacagtcttttaccataccagtgtgtatgtgcatgtctatatagatattcttttatatagatgatgaataatttgtgcttgcactgtacaacccggacatattttgtttgtgcagtgcatccctgactcagtaaataatataattaaactttgccttcattatcttatgtttgtgtcttcaacattgcag

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA03G02250.1 (Glycine max), 5'ss of exon 13
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTG---AACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatca----agtgca-------aagtgtgataattgttctaacag-ctatctatggcataatcttttcag---------------------------------------------------------------------------------------------------
    ||||| ||||| |||||    || || || || ||||| |||||||| ||||||||||| |||||||||||    |||||||| || ||||||||||||||   || | ||  |||||||| ||    |||          ||||    |  ||  | | | ||  |    ||        |||  |                                                                                                     
---TGAGAATTTGGAGAATCCCAGTCTTTATCACTACGCACTGTTCTCAGATAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACTATTATGAATGCTAAGgtgacttgggctgtctttttaaccataccagtatttgtgtgcaagttcattgtttccttttatagattgcaaataagggtgccttgaccatggtcaacatatcgtgcatgtgaaagtgtatctatgatttagtaaattatattattaaaaccaggcctcataacttagtttctgtcttcaatgttgcag

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA18G45750.1 (Glycine max), 5'ss of exon 7
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTG---AACTCAACCATCATGAATGCTAAGgtagtttcgtcttccttttt--aatcaagtgcaaagtgtg-ataattgttctaacagctatctatggcataatcttttcag-----------------------------------------------------------------------------------------------------------------------
    ||||| ||||| |||||    ||||| |||||||| || ||||| |||||||||||||| |||||||||||    |||||||||||  ||||||| |||||   || | ||  ||||||  |  | ||||    ||||  ||   |||      |  | | | |   | |   |    |                                                                                                                        
---TGAGAATTTGGAGAATCCTAGTCTCTATCATTATGCCCTGTTCTCGGACAATGTCTTGGCTGCATCTGTTGTTGTCAACTCAACCATTGTGAATGCAAAGgtgacttggactgtctttttccataccagtgtgt-gtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtag

upper sequence: LOC_Os09g36180.1 (Oryza sativa), 5'ss of exon 8
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 5'ss of exon 8
GAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATC---TGTTGTGAACTCAACCATCATGAATGCTAAGgtagtttcgtcttcctttttaatcaagtgcaaagtgt---gataattgttctaacagctatctatggcat-aatcttttcag------------------
    ||||| |||||||||||| | || ||||||||||| || ||||| || ||||| ||||| || ||   |||||| |||||||||||| ||||||| |||||    | ||     | |||| |  |    |   | |     | ||  |  || |    |  ||   ||  | | ||   |                   
---TGAGAATTTGGAAAATCCAAATCTTTACCATTATGCTCTCTTCTCTGATAATGTATTGGCTGCTTCAGTTGTTGTCAACTCAACCATCTTGAATGCCAAGgtgaagtggtggatttatttactttatactagcatctttaagtgatcttcttatcctagacttaaaacaccagtattagtatcccctaatttatctacat