1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAAACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatgttctgctgttgattaatttttctagggactaggcctttgccaatgtcattgataaatatttcaaacttccag
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|29672112|gb|CB668387.1|CB668387
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|218486017|gb|FG967018.1|FG967018
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: CGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|88336930|gb|CI627010.1|CI627010
genomic: CGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|87023726|gb|CI286477.1|CI286477
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|58686669|gb|CK075356.1|CK075356
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|218502440|gb|FG963347.1|FG963347
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCGGATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|25802299|gb|CA758260.1|CA758260
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAAGGCTGGACATTAATGAAGTGCAGCTTATCATTCAA TGTGA-CCTNCACGTGATGTTGAAGCCTAC-TACACCGGTCAAGGTCG-ACEST: gi|218487667|gb|FG948994.1|FG948994
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCA-GGTCGGAC
EST: ATGATGTGCAGCTTATCATTCAG TGTGAA-CTCCACGTGATGTTGAA-CCTACATACACCGGTCAGGTCGGACTEST: gi|218495874|gb|FG947056.1|FG947056
genomic: ATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: CACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|29637932|gb|CB642941.1|CB642941
genomic: CACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACTEST: gi|58691703|gb|CK080390.1|CK080390
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
EST: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAG TGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
genomic: ACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatg ... aaacttccagTGTGAACCTCCACGTGATGTTGAAGCCTACATACACCGGTCAGGTCGGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATTCTTGCTGGGTTCAGGAGTGGCAAGTTTTTAGTTTTGGTTGCTACAAACGTGGCTGCACGAGGGCTGGACATTAATGATGTGCAGCTTATCATTCAGgtacgacatgttctgctgttgattaatttttctagggactaggcctttgccaatgtcattgataaatatttcaaacttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT