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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtacctttttccatatatctccacattcaatgttttgactatctgccatttggttggaaggttagcattgcatcatcgcttgaagatagtatcttgacct...

Basic information

species Oryza sativa
transcript LOC_Os09g29470.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g29470.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G115304_T01 (Zea mays), 5'ss of exon 8
CTTTGGAACAATATGAAGGAATCCTCTGCACATCTGTTGGATTGAACAACGTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtacctttttc-catatatct-ccacattcaatgtttt--gactatctgccatttggttggaaggttagcattgcatcatcgcttgaagatagtatcttgacct
|||||||| ||||||||||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||| || |||||||| || |||||  ||||||||||| | |  |||||| | |||||||||| | | |  ||  ||||| ||||| | || ||  | |   | |||   |  |||| | |  || | |||    
CTTTGGAAGAATATGAAGGAATACTCTGCACTTCTGTTGGATTAAACAATGTCTGGGGGCAAATTTTACCAGACCCATTTCTCAGACGGCTGATTCTCAGgtaccttgtacatatatatttgccacattcaaagctatatgaacatctggcatttagctgtaacatcaatttagcaatgtaacttggaaagggtgtattg----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623684|gb|CB628695.1|CB628695
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|218494056|gb|FG946879.1|FG946879
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATCTTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|29637840|gb|CB642849.1|CB642849
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
EST: gi|29677428|gb|CB673703.1|CB673703
EST:     GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAG                         GTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG
genomic: GTCTGGGGACAAATTTTACCAGATCCTTTTCTCAGGCGCCTGATCGTCAGgtaccttttt ... taatttgcagGTTTATTTTCTGCCGAGCAGTTATATTCTATTTTCACCCTGAGGAGAATGG