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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCGATGCTACAAGACTTGAACGTGTGCGCTTGAGATTGCCGGTTGAACCACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtccttggattcgtattttccaaatgttttcctcttgatttctcgttgatcagcgttcgcgaagatttctcgttgatcaacctttcatggcgcttttcag

Basic information

species Oryza sativa
transcript LOC_Os09g28570.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G147191_T02 (Zea mays), 5'ss of exon 8
TCGCGATGCTACAAGACTTGAACGTGTGCGCTTGAGATTGCCGGTTGAACCACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtccttggattcgtattttccaaatgttttcctcttgatttctcgttgatcagcgttcgcgaagatttc--tcgttgatcaaccttt-catggcgcttttcag
|||| |||||||||||||||| |||||||   ||||||| ||  |  || | || | ||||||||| ||||||||||| ||||| |||||||||||||||||||||| || | ||  | |||| ||| ||||||    |||||| ||    |||   | ||  |  ||||||   | ||| |    |||||  |  |          
TCGCAATGCTACAAGACTTGAGCGTGTGCAACTGAGATTTCCTATCAAAGCGCATAGTGCTCTGGTTAAAATAATATATGCTGGCGTAAATGCTAGTGATgtaagtctttcggtt--tctttttcaattgttttttcgttgattcct----gatgcccattaactgagatttggatggtttaatggcctttgtacag----------

upper sequence: LOC_Os09g28570.3 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G368058_T01 (Zea mays), 5'ss of exon 3
TCGCGATGCTACAAGACTTGAACGTGTGCGCTTGAGATTGCCGGTTGAACCACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtccttggattcgtattttccaaatgttttcctcttgatttctcgttgatcagcgttcgcgaagatttctcgttgatcaacctttcatggcgcttttcag
 ||  |||||||||| ||||| ||||||||| ||||||| ||  ||||||| |||||  |||| || ||||| ||||| |||||||||||||||||||||||||||| ||| ||| | ||||||   || || || | || ||| | | ||| | | |  |  | |     | |   ||||  |  |||||             
CCGGAATGCTACAAGGCTTGAGCGTGTGCGCCTGAGATTACCCATTGAACCGCACAACACTCTAGTTAAAATTATATATGCTGGTGTAAATGCTAGTGATgtaagtctttgcatttggattttc--gattttctcttttttattccccattgcttaaccattacaaga---tgttaatgat--atgtttcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88405965|gb|CI591360.1|CI591360
EST:     CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGAT                         GTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
genomic: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtcctt ... cgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
EST: gi|58688798|gb|CK077485.1|CK077485
EST:     CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGAT                         GTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT
genomic: CACACAATGCTCTGGTCAAAATAATATACGCTGGTGTAAATGCTAGTGATgtaagtcctt ... cgcttttcagGTTAACTTCAGTGCTGGGCGTTATTTCAGTGGTGGTGCTAAAGAAACTGCT