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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctcatactgctttccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcag

Basic information

species Oryza sativa
transcript LOC_Os09g24200.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g24200.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G105772_T02 (Zea mays), 5'ss of exon 8
CACCGATGCTGCTGGTCTAGGAAATCTTGATGCTTTGCGCAATAATGCACAATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttct-catactgctttccttaaaaataaaaaaaaaataaaaaacctcactgactggccaattcatttgcag----------------------
  |||    ||||||   |||||| ||||||| |||||||||||| | |||||||| || | |||||  ||| ||||| || |||||||| ||||| ||||| | | |   | ||   || || |         |      ||  | |  |  |   ||  | |||||    ||                       
TTCCGCCAATGCTGGCACAGGAAACCTTGATGTTTTGCGCAATAACGTACAATTCCAAAACCTGCTTGGTTTGGTGCAGGCTAATCCTCAGATTTTGCAGgtctgtttgtgtcctctgttgctcatcctctttcagtctccaacgatctcccttttgtgatccattcacccacaatttctttatctgcattgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27554427|gb|CA998327.1|CA998327
EST:     AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAG                         CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
EST: gi|218493918|gb|FG945281.1|FG945281
EST:     AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAG                         CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
EST: gi|2797172|gb|AA750466.1|AA750466
EST:     -ATTCCGAACCTTGCTTTCTTTAGTGC-AGCCAATCCTCAAATTTTACAG                         CCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT
genomic: AATTCCGAACCTTGCTTTCTTTAGTGCAAGCCAATCCTCAAATTTTACAGgtttttctca ... tcatttgcagCCATTGCTTCAAGAATTGGGGAAACAAAATCCCCAGATTTTGCAGCTGATT