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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAAGGCTATTAATTTGGTGCACACGCGGAGAAATCTGGTTGAGAATGATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAGgtacgctgaaattttacttaatctttgtctttcttcacaatagatatttactgaatccagctagaactgtaacataaaggagatgtcttgtgtatcagtg...

Basic information

species Oryza sativa
transcript LOC_Os09g21780.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g21780.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G116196_T01 (Zea mays), 5'ss of exon 8
TATCAAAGGCTATTAATTTGGTGCACACGCGGAGAAATCTGGTTGAGAATGATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAGgtacgctgaaattttacttaatctttgtctttcttcacaatagatatttactgaatccagc-tagaactgtaacataa---aggagatgtcttgtgtatcagtg
|||||||  |||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||  || | ||||| |||   |||   ||  ||  ||     ||          || |  |||   ||  |  ||    |     |  | || ||  |||  
TATCAAAATCTATCAACTTGGTGCACACACGGAGAAATCTTGTTGAGAATGACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgca-ttttatttacctttttagttcttttgcagatcctaaagggcaggcccggtgtagtggtgagagctatctcaccgagtcacctg-gttgcag--

upper sequence: LOC_Os09g21780.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G055917_T01 (Zea mays), 5'ss of exon 8
TATCAAAGGCTATTAATTTGGTGCACACGCGGAGAAATCTGGTTGAGAATGATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAGgtacgctgaaattttacttaatctttgtctttcttcacaatagatatttactgaatccagctagaa----ctgtaacataaaggagatgtcttgtgtatcagtg-------------------------------------------------------------------------------------------
|||||||  |||| || || |||||||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||   ||||| ||| | |||   |   ||  || ||| ||  |||||||||  || ||||    ||  ||||  || ||||| |  | |  ||   |                                                                                            
TATCAAAATCTATCAACTTCGTGCACACACGGAGAAATCTTGTTGAAAATGACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg-ttttatttattttttaggtcaatt-gcagtagtta--tactgaatctggccagaaactgcttcaacacgaaagagatattgtctacatttttttactctgtttatttcagttggaatatttgttctatctggtcaaatgaatgtgttttcagaacacgtactgatatggcatgtctttgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88340089|gb|CI650536.1|CI650536
EST:     GATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAG                         GGTGGCCAACTACTGTCTTAAATTAGCTGGTGAACAAGAAAAGATGGTATC
genomic: GATCGTGTTTTGCTGAACCGAGCACATCGTGCTCAACAGGAATATGAAAGgtacgctgaa ... ctttatatagGGTGGCCAACTACTGTCTTAAATTAGCTGGTGAACAAGAAAAGATGGTATC