1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttacacagtaacattgagaagatgatcattgattgtaaatttctagtttttctcatggtttagtgtcgatcttccttcag
species | Oryza sativa |
transcript | LOC_Os09g15420.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA GGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAGEST: gi|86257757|gb|CI064110.1|CI064110
genomic: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttaca ... cttccttcagGGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
EST: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA GGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAGEST: gi|109712885|gb|CI105493.1|CI105493
genomic: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttaca ... cttccttcagGGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
EST: AGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA GGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAGEST: gi|86505663|gb|CI148296.1|CI148296
genomic: AGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttaca ... cttccttcagGGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
EST: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA GGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAGEST: gi|88998065|gb|CI037950.1|CI037950
genomic: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttaca ... cttccttcagGGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
EST: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAA GGCNAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
genomic: GAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttaca ... cttccttcagGGCAAAATATGGCATCGAAGAAATGTGCAGAGACCAATGGAACTGGGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAATACCTTTGGTTATTGGTCCACGACGCCCTGGTGATGCTGAGATTCTCTTTTCGTCAGCTGCTAAAGCAGAGAGAGAATTCAAGTGGAAgtaagttacacagtaacattgagaagatgatcattgattgtaaatttctagtttttctcatggtttagtgtcgatcttccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA