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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattgaacaagccatatagtcttgttttgcatgaaccgtatccagggctgaccagttattgtttacag

Basic information

species Oryza sativa
transcript LOC_Os08g44400.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55408882|gb|CV721258.1|CV721258
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|58590549|gb|CF988857.1|CF988857
EST:     ACTATTACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCT
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCT
EST: gi|86872687|gb|CI341897.1|CI341897
EST:     ACTATAACACCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|33821435|gb|CF336529.1|CF336529
EST:     AGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: AGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|29687876|gb|CB684151.1|CB684151
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|58589659|gb|CF987967.1|CF987967
EST:     GCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: GCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|38478016|gb|CF962149.1|CF962149
EST:     ACTATAAGAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|58593409|gb|CF991717.1|CF991717
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|88996530|gb|CI260034.1|CI260034
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|27548923|gb|CA767585.2|CA767585
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|12623212|gb|AU173425.1|AU173425
EST:     ACAACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACAACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
EST: gi|29685102|gb|CB681377.1|CB681377
EST:     ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAG                         GGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG
genomic: ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattg ... ttgtttacagGGTTCTAAGTATACTCCTGCAAAGCTTCCACCCGAGCCAATAGAACTATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTATAACAGCAGGGCTCGCAATGAGTGGACGTAGTGGGAAGgtacatattgaacaagccatatagtcttgttttgcatgaaccgtatccagggctgaccagttattgtttacag

- - - - - - - - - - - - AGTGGA