1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATTACAGGTTCTTTTGATGGCAACATGAAAATCCTCGAGTTAAGAAGGAACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattattatttttatttatgttttgttatggagccatggctccatttggctctgttcaaaaaaatgacacattattaaagttgtatgctaattattggagcattcacctttag
species | Oryza sativa |
transcript | LOC_Os08g34950.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACG GAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTCEST: gi|33676698|gb|CF304937.1|CF304937
genomic: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattatt ... tcacctttagGAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
EST: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACG GAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTCEST: gi|29679725|gb|CB676000.1|CB676000
genomic: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattatt ... tcacctttagGAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
EST: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACG GAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTCEST: gi|33678298|gb|CF306537.1|CF306537
genomic: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattatt ... tcacctttagGAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
EST: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACG GAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTCEST: gi|33796202|gb|CF323967.1|CF323967
genomic: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattatt ... tcacctttagGAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
EST: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACG GAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
genomic: ACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattatt ... tcacctttagGAATCATTGAAGAATCTACTGAACAAGGAGATCAGAAAGGGGAAGCCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTACAGGTTCTTTTGATGGCAACATGAAAATCCTCGAGTTAAGAAGGAACATCATGGAGCTGGAAGAGATCCTGCAAATAGAGAAAGCAGATTTTACGgtaaattattatttttatttatgttttgttatggagccatggctccatttggctctgttcaaaaaaatgacacattattaaagttgtatgctaattattggagcattcacctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT