1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagctgttttttgtaccaaatgctacattatgtcaaaccttttgtgaattcttcttgtgtgatgaatttgtttgtgcatgtggccatgctcatca...
species | Oryza sativa |
transcript | LOC_Os08g31840.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGCAACTGATCCTGATGTATTATTGCCAATTGCCTTCACATTCAAG GTGTCTAGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAEST: gi|88557068|gb|CI487446.1|CI487446
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
EST: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG GTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAEST: gi|86883180|gb|CI328639.1|CI328639
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
EST: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG GTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAEST: gi|88548655|gb|CI476470.1|CI476470
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
EST: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG GTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAEST: gi|88295035|gb|CI522989.1|CI522989
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
EST: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG GTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAAEST: gi|88528600|gb|CI456848.1|CI456848
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
EST: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAG GTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
genomic: AAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagct ... ttatttacagGTGTCTGGTCGTCTTGAAGAGCTGGAGAAAGAGTATCAGAAAAAATTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAATTGCCTTTCGAGAAACTTCTACATGCTTTCAGAAACTTCCCAGAAGAGGCAACTGATCCTGATGTACTATTGCCAATTGCCTTCACATTCAAGgtgatgagctgttttttgtaccaaatgctacattatgtcaaaccttttgtgaattcttcttgtgtgatgaatttgtttgtgcatgtggccatgctcatca
- - - - - - - - - - - - - - - - - - - - - - - - AAGAGG