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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttatggaaatctatttatgactgttgttgaattcatgaaagcacaatgttgcagtagtactggaattctttgttctactttcactggtttgtgc...

Basic information

species Oryza sativa
transcript LOC_Os08g26870.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G006468_T04 (Zea mays), 5'ss of exon 8
GAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttatggaaatcta-----tttatgactgttgttgaattcatgaaagcacaatgttgcagtagtactggaattctttgttctactttcactggtttgtgc
|||| |||||||||||||| ||||| ||| ||||||||||||||||||||||  ||||||| ||| | || || |||||||| |||||||| ||||||||||||| |    |     ||     ||||     | ||| | |||  |      | | | | |   |  | |    |   ||  || |  | | |   | ||    
GAAGTCTTGCATACAGTGACGGCATCAGACCAGTCGAGCCAGCAAGAATGGCAGTAGCAGCTGGCCTATCAGATGGGTTGTTATTTACAGAGCTTGACAGgtattctagaaggcgaataagaattttacagtagctgtaggatttgttttta-atattttcgtgatc-tgcccccaactttgcttgtggtctaagaagcttt---

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G053531_T02 (Zea mays), 5'ss of exon 8
GAAGCCTTGCATACAGTGATGGCATAAGATCAGTCGAGCCAGCAAGAATGGCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttatggaaatcta-----tttatgactgttgttgaattcat---gaaagcacaatgttgcagtagtactggaattctttgt--tctac------tttcactggtttgtgc----------------------------------------
|||| ||||||||||||||||| || ||| ||||||||||||||||||||||  || |||| ||| | || || |||||||| |||||||| ||||||||||||| |    |     ||     | ||  |  ||||| | |||  |    ||       |||||   |    |     ||  |||   ||||        ||   || | | ||                                         
GAAGTCTTGCATACAGTGATGGGATTAGACCAGTCGAGCCAGCAAGAATGGCAGTAACAGCTGGCCTATCAGATGGGTTGTTATTTACAGAGCTTGACAGgtattctagaaggcgaataagaattatacaatggttgtaggatttcttttaaatattttttgttgatctgcccccaactttgcttggggtctaaaagaagctttgttgttatatgaatctatatgttatttttttcttacacttgcatttttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86436048|gb|CI107281.1|CI107281
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|109974602|gb|DT806998.1|DT806998
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|84117164|gb|CD150931.1|CD150931
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATCCGGAA
EST: gi|29629366|gb|CB634377.1|CB634377
EST:     GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAG                         ACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATC
genomic: GCGATAGCAGCCGGCATGTCTGACGGGTTGTTGTTTACAGAACTTGACAGgtattgttat ... actttatcagACCTGATGGGCAGCCATGTGTCGAGGCTCAAGAGTTTGGATTGATC