1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACATTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaattgattttcttatcgttaagcatttaatatgtttatatgttcttactttttttaatgaattttactattcggtctttctcatctcttctc...
species | Oryza sativa |
transcript | LOC_Os08g25734.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|89177014|gb|CI111214.1|CI111214
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29681077|gb|CB677352.1|CB677352
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|86417728|gb|CI031937.1|CI031937
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29612859|gb|CB617872.1|CB617872
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|38472262|gb|CF956393.1|CF956393
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29671442|gb|CB667717.1|CB667717
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|86599888|gb|CI256050.1|CI256050
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAAATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29660395|gb|CB656670.1|CB656670
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|88835869|gb|CI370974.1|CI370974
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAA-GGCAATCATCGACAAGAATGCTCGTATTTGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29620180|gb|CB625192.1|CB625192
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATACEST: gi|29633748|gb|CB638757.1|CB638757
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
EST: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAG ATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
genomic: TTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaa ... atggatgcagATAATCAATGTTGACAATGTCCAAGAAGCTGCAAGAGAGACTGATGGATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTGGTGAAAAAGGTGGCATTCCCATTGGTATTGGGAAGAATTGCCACATTAGAAGGGCAATCATCGACAAGAATGCTCGTATTGGAGATAATGTGAAGgtattccaaattgattttcttatcgttaagcatttaatatgtttatatgttcttactttttttaatgaattttactattcggtctttctcatctcttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT