Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgccatttcatcttgatctctatttctgacccattgatttcttccattgaagctcacacgttttgtatgacttccctctggtag

Basic information

species Oryza sativa
transcript LOC_Os08g25624.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g25624.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G174107_T01 (Zea mays), 5'ss of exon 8
CCTGTCACTCACTCCGTGGGCAACTGTGTTAAGCGTGTCGTGGTCATCGTAACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgccatttcatcttgatctctatttctgacccattgatttcttccattgaagctcacacgttttgtatgacttccctctggtag
||||||||||| || ||||||||||||||||| ||||| |||||||| |||||||| ||  ||||||||||||| |||||||||||||||||||| |||||||||   |    || | ||   ||||| | | ||  | |||   | ||||  ||| | | |       |  | | |  |   | |  |||
CCTGTCACTCATTCTGTGGGCAACTGTGTTAAACGTGTTGTGGTCATTGTAACATCAGTGCTGTTCTTCAGGACACCTGTTTCTCCTATCAACTCTCTCGgtaagcatgtttcttaacctgtttctctgtctttgttctatttcatccttctgttgtatcaccattacatgctttcatctgtgtgta-tag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88473501|gb|CI410772.1|CI410772
EST:     AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCG                         GCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
genomic: AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgc ... cctctggtagGCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
EST: gi|88516280|gb|CI443934.1|CI443934
EST:     AACATCGGTTTTGTTGTTCAGGACTCCTGTTTGTCCTATCAACTCCCTCG                         GCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAG
genomic: AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgc ... cctctggtagGCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGA-
EST: gi|88519340|gb|CI446994.1|CI446994
EST:     AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCG                         GCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
genomic: AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgc ... cctctggtagGCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
EST: gi|88491816|gb|CI429088.1|CI429088
EST:     AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCG                         GCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
genomic: AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgc ... cctctggtagGCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGAGAC
EST: gi|88292064|gb|CI532656.1|CI532656
EST:     AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCG                         GCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAAGTGAAGAGGG
genomic: AACATCGGTTTTGTTCTTCAGGACTCCTGTTTCTCCTATCAACTCCCTCGgtaagtccgc ... cctctggtagGCACTGCCATCGCACTTGCCGGAGTTTTCCTGTACTCACAACTGAAGA-GA