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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGGAAGCTCAACAAATGGCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgtaacacattttgagctactgcaaatttcttactaatgtttgtcaagtgttatttttatttttaatctagctaaactttgcag

Basic information

species Oryza sativa
transcript LOC_Os08g08030.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08030.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G309109_T01 (Zea mays), 5'ss of exon 8
AAAGGGAAGCTCAACAAATGGCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgtaacacattttgagctactgcaaattt----cttactaatgtttgtcaag-----------tgttatttt-tatttttaatctagctaaactttgcag---------------------------------------------------------
|  ||||||  |   | | |  |||| ||| |  ||  ||||| ||||| | ||| ||||||| |||||||||||||||||||| || |||||||  ||||||| ||   |||| | || |  ||       | || || | |||   |||           ||  ||||   || | || | |   | || | | | |                                                         
ACGGGGAAGTCCTGGAGACGCTATCAGTGAGCTCCTTCTGCCACGTTTTGTGGACATGGTAATTTGGGGCCATGAGCATGAATGTCTGATTGATCCACAGgtaaaactgattgatccacaggtaaaacaagacatattagtatttaaaaagagggcaagaggtgcaatttagcatatgtatttttagtcaagtgttctgtctttccgcttttgtatttaattttaactttgttttccttctatcaactactcacag

upper sequence: LOC_Os08g08030.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AC191523.3_FGT001 (Zea mays), 5'ss of exon 1
AAAGGGAAGCTCAACAAATG-GCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgtaacacattttgagctactgcaaatttcttactaatgtt-tgtcaagtgttatttttatttttaatctagctaaactttgcag
 | || ||  |      ||| || | ||||      |  | |  || |  |  ||| |  || |||      |   |     | |   |||| | ||       |   ||||| ||  |       | |||| ||  | || | |  | | |||  ||| ||||   |||| | |    |  |||
-ATGGTAATTTGGGGCCATGAGCCTGAATGTCTGATTGATCCACAGgtaacaagacatattagtatttaaaaagaggggaagaggtgcaatttagcat------atgtatttttagtcaagtgttctgtctttctgcttttgtatttaattttaactttgttttccttctatcaactactcacag

upper sequence: LOC_Os08g08030.1 (Oryza sativa), 5'ss of exon 8
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 5'ss of exon 9
AAAGGGAAGCTCAACAAATGGCATCAATGAACAGCTCTTGCCAAGTTTTCTTGACTTGGTAATATGGGGCCATGAGCATGAATGCCTAATTGATCACCAGgt--------aac---acattttgagctactgcaaatttcttactaatgtttgtca-agtgttatttttatttttaatctag------ctaaactttgcag-
 ||   || | | | |||||  || | ||| ||  |  | ||| |||| || |||||  |  | |||||||||||||||||||||||||| || | ||||||        ||    |  ||| ||| || ||||   ||   |  |  ||  | || | ||||| ||   | ||| | |||        ||||||||  |  
GAAATCAAACCCCAAAAATGCAATAAGTGAGCACTTTCTTCCACGTTTCCTCGACTTCATTGTGTGGGGCCATGAGCATGAATGCCTAATCGACCCCCAGgtccatgaaaaatttgatttttggagttattgca---tttaaataagagtgagccacaatgttacttgcctctttgagctaaaagctattaaacttttgaag