1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGGCCTCCGATCACGGCGCGATCGGAATGTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacctcagtcctcttgcctttccacaaagtctatatcaagctctcaactccatgcttcctagtattgaatcatttgcttttcaccccccattggaatgatggtgccttactctcttttcctctgtccttgccatcacttgccccttgcag
species | Oryza sativa |
transcript | LOC_Os07g48410.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GAATACTAGCAGCEST: gi|88851800|gb|CI675002.1|CI675002
genomic: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacct ... ccccttgcagGAATACTAGCAGC
EST: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GAATACTAGCAGCEST: gi|86257029|gb|CI061792.1|CI061792
genomic: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacct ... ccccttgcagGAATACTAGCAGC
EST: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GA-TACTAGCAGCEST: gi|88221815|gb|CI221771.1|CI221771
genomic: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacct ... ccccttgcagGAATACTAGCAGC
EST: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GAATACTAGCAGCEST: gi|88268546|gb|CI378481.1|CI378481
genomic: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacct ... ccccttgcagGAATACTAGCAGC
EST: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTA GAATACTAGCAGCAAAGAAAAAGAGAATAGTGGAATATAGG
genomic: GTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacct ... ccccttgcagGAATACTAGCAGCAAAGAAAAAGAGAATAGTGGAATATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGCCTCCGATCACGGCGCGATCGGAATGTAAAGTTGTTCTGAATGGAAGTGAGTAATACTACTACTGCCTAATCCTAgtaagcacctcagtcctcttgcctttccacaaagtctatatcaagctctcaactccatgcttcctagtattgaatcatttgcttttcaccccccattggaatgatggtgccttactctcttttcctctgtccttgccatcacttgccccttgcag
- - - - - - - - - - - - - - - - - - - - - - - TGGAAG