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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGACATTATTGCTCTTCTTTTTACCTGAGGTTCTTAACTTTCTGTGCTCAGTCCCACAGgtatggaagaatccatttcattttttttattttcctctcaattgatacaatatcttctttagttaattaggcatttggtctgcttacactttaatttgtgcttctatttgctacag

Basic information

species Oryza sativa
transcript LOC_Os07g46640.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46640.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G137707_T01 (Zea mays), 5'ss of exon 8
CGAGACATTATTGCTCTTCTTTTTACCTGAGGTTCTTAACTTTCTGTGCTCAGTCCCACAGgtatggaagaatccatttcattttttttattttcctctcaattgatacaatatcttctttagttaattaggcatttggtctgcttacacttta-atttgtgcttctatttgctacag
|||||||||||||||||||||||||||| | |||||||| || || || ||||||||||||||  |||  ||    || ||||| |||| |||   |      ||| | |  |       ||| | | |||| | |||   |||||| |||| | |  | |   | | |||  | |||
CGAGACATTATTGCTCTTCTTTTTACCTCAAGTTCTTAATTTCCTATGTTCAGTCCCACAGgtcaggagaaacaatttccatttgttttctttattttgattctgagatatgag------tagctgagtaggtacttgaaatgcttaaacttcagaaatttatctttgtttcttgcag

upper sequence: LOC_Os07g46640.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM5G827205_T02 (Zea mays), 5'ss of exon 8
CGAGACATTATTGCTCTTCTTTTTACCTGAGGTTCTTAACTTTCTGTGCTCAGTCCCACAGgtatggaagaatccatttcattttttttattttcctctcaattgataca-atatcttctttagttaattaggcatttggtctgcttacacttta-atttgtgcttctatttgctacag
|||||| || |||||||||||||||||| | |||||||| || ||||| || |||||||||||  |||  |||   || |||||  ||| |||   |  |   ||| | |  ||| || | ||| | | | || | ||| | |||||| |||| | | || |                 
CGAGACGTTGTTGCTCTTCTTTTTACCTCAAGTTCTTAATTTCCTGTGTTCGGTCCCACAGgtcaggagaaataatttccatttgatttctttatttgact-ctgagatatgtatgttttatagcttagttggtacttgatatgcttagacttgagaattat-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38472391|gb|CF956522.1|CF956522
EST:     TTCTGTGCTCAGTCCCACAG                         CTGTTTAAGTTTGTTCCCTGCCCAAGGCACAGGTTGCCAAG
genomic: TTCTGTGCTCAGTCCCACAGgtatggaaga ... tttgctacagCTGTTTAAGTTTGTTCCCTGCCCAAGGCACAGGTTGCCAAG