1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAGAACAAATGAAGAGAATTGGCAATGAGCTAGACTCGGTTCACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctctctctctccccccctgcacacacgtatgttactcgtttcgtcccaaaataagtgcagccctctagttcaaatttgaactagaaggctgcactcattttgggacagatggagtatatttgaagtggctgtgcctagacttacaagattcattgctgcag
species | Oryza sativa |
transcript | LOC_Os07g44350.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGAGATTGGTCGGCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|88979418|gb|CI025920.1|CI025920
genomic: AAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: GGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|86525703|gb|CI165909.1|CI165909
genomic: GGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|86861383|gb|CI328124.1|CI328124
genomic: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: CCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|3761988|gb|C99236.1|C99236
genomic: CCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|87021361|gb|CI295420.1|CI295420
genomic: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|88981829|gb|CI027407.1|CI027407
genomic: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGTEST: gi|163917970|gb|EG713132.1|EG713132
genomic: ACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
EST: TAGCCAAATGGTGAAAGAGATTGGTCGCCAG GTTGCAACTGACAAATGCTTCATGGCATTCCTATTTCTGATAGTCTGTGGT
genomic: TAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctc ... attgctgcagGTTGCAACTGACAAATGCATCATGGCATTCCTATTTCTGATAGTCTGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAACAAATGAAGAGAATTGGCAATGAGCTAGACTCGGTTCACTTTTCACTGAAGAAGGCTAGCCAAATGGTGAAAGAGATTGGTCGCCAGgttctctctctctctctccccccctgcacacacgtatgttactcgtttcgtcccaaaataagtgcagccctctagttcaaatttgaactagaaggctgcactcattttgggacagatggagtatatttgaagtggctgtgcctagacttacaagattcattgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA