1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCATCGGGTATTGTTTTTGTTGGAGACAACATGAAGCAAAACACGGAAACTATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTGgtacgcattcttctgcataatccagaaaagcctcctcacttcaattttttagcaatgtctataacacgggatgtgaaaaaatagcattttcgatgaatta...
species | Oryza sativa |
transcript | LOC_Os07g26440.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTG AGCATAAGTCTGGTCAACAGATGGGGTATCAGGEST: gi|568350|gb|D39198.1|D39198
genomic: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTGgtacgcattc ... tgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGG
EST: TGCTTCTAAAGCTG AGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGGEST: gi|428893|gb|D25049.1|D25049
genomic: TGCTTCTAAAGCTGgtacgcattc ... tgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGG
EST: TGCTTCTAAAGCTG AGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGGEST: gi|38471579|gb|CF955710.1|CF955710
genomic: TGCTTCTAAAGCTGgtacgcattc ... tgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGG
EST: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTG AGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGGEST: gi|29676452|gb|CB672727.1|CB672727
genomic: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTGgtacgcattc ... tgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGG
EST: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTG AGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGG
genomic: TATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTGgtacgcattc ... tgctttacagAGCATAAGTCTGGTCAACAGATGGGGTATCAGGCTGCATATCCTCCATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCGGGTATTGTTTTTGTTGGAGACAACATGAAGCAAAACACGGAAACTATGTCTGTTTCCAATGGAGAGGCAAATGGCGAGGATGCTTCTAAAGCTGgtacgcattcttctgcataatccagaaaagcctcctcacttcaattttttagcaatgtctataacacgggatgtgaaaaaatagcattttcgatgaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG