1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACCTCAGCAGAAGGAACAAAGCCATCTTCTGATCTTCCAGAATCTTCTGCCGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaatccattaaagtcatattcatgctgctgataccagcttaataatgttgagattgagataattgatgatccttaaatttttgtttcag
species | Oryza sativa |
transcript | LOC_Os07g25710.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGAGAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|25805355|gb|CA761316.1|CA761316
genomic: AGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAAAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|29673026|gb|CB669301.1|CB669301
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|86864674|gb|CI344223.1|CI344223
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: TCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|88993115|gb|CI108743.1|CI108743
genomic: TCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: GATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|88276417|gb|CI397021.1|CI397021
genomic: GATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: GAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|86260267|gb|CI066140.1|CI066140
genomic: GAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|89189637|gb|CI049176.1|CI049176
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCCAACCAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|88966647|gb|CI365870.1|CI365870
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: GTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGA-GGTCTCTCCAAGATGTGGAEST: gi|32948129|gb|BP184701.1|BP184701
genomic: GTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGAEST: gi|89198566|gb|CI016651.1|CI016651
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
EST: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAG AATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
genomic: CGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaat ... tttgtttcagAATCAGGTGACAGATAATGAGGATGTGATGAGGGTCTCTCCAAGATGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTCAGCAGAAGGAACAAAGCCATCTTCTGATCTTCCAGAATCTTCTGCCGTGAAGGATGTTCCAGAGAACAGTCAGAACGGAATAGCCAAACAAACAGgcatgagaatccattaaagtcatattcatgctgctgataccagcttaataatgttgagattgagataattgatgatccttaaatttttgtttcag
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