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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctcttgaatgttgtcaccagttataatcaatcctgctaactgttagctctccaatcatatgcaataaatgttgacaatgagctgcttttctgt...

Basic information

species Oryza sativa
transcript LOC_Os07g22640.4
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g22640.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G092129_T02 (Zea mays), 5'ss of exon 8
GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctcttgaatgttgtcaccagttataatcaatcctgctaactgttagctctccaatcatatgcaataaatgttgacaatgagctgc-ttttctgt--------
||||||||| |||||||||||||||| ||||||  |||||||||||||| |||||||  ||||||||||||||||||||| |||||  ||  |||   |  | |         | |||   ||| || |   |  || || ||    | |  |||| || |    |   |||  | | || ||         
GACACTGTCGATTCAATTGTTTCTGATATGCTCTTGTGGCCACACAGGCATGTTGTTAAACTTGGTGTCAATGTTGATACGAGgtgggtttccttatttcctct---------ttatcttaccttcttagaatgtgcacttcagctgtttaaaatagatatctcaacaaagcctcatcttttgctgattaat

upper sequence: LOC_Os07g22640.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA07G09070.1 (Glycine max), 5'ss of exon 9
GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAAT---GTTGATACAAGgtgact-----tctcttgaatgttgtcaccagttataatcaatcctgctaactgttagctctccaatcatatgcaataaatgttgacaatgagctgcttttctgt-
|| ||||| || ||||||||| ||||||||||| | ||||| || ||| |||| ||||||||||||| || |   |||||||| |||| | |     |||  || | ||| |  |   || |  | | || | || | ||       |  || |||   | |   |||||| | ||   ||  |        
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaatcttctggaagtttttgctt-ttgtttttattctttctgattgcaga---taaaaacatg-actaggtatgttg-ctatattcttttaacaaaat

upper sequence: LOC_Os07g22640.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA03G02370.1 (Glycine max), 5'ss of exon 8
GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAAT---GTTGATACAAGgtgacttct---cttgaatgttgtcaccagttataatcaatcctgctaactgttagctctccaatcatatgcaataaatgttgacaatgagctgcttttctgt
|| ||||| || ||||||||| ||||||||||| | ||||| || ||| |||| ||||||||||||| || |   |||||||| |||| | |  |     | ||| || |      || |  |   | ||| |  | | ||        |  | ||    |   | |   |  | | |    |||    
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttctttctgattgcagataaaaacatgactagatatg-ttgctatatccttttaacaaaatttta--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624991|gb|CB630002.1|CB630002
EST:     AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG                         GTATATGATGAAGACAGACTTCAGCAAGACAANAAGCTTGGTGTAGCTAAA
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... ttttttgcagGTATATGATGAAGACAGACTTCAGCAAGACAAAAAGCTTGGTGTAGCTAAA
EST: gi|29624993|gb|CB630004.1|CB630004
EST:     AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAG                         GTATATGATGAAGACAGAC
genomic: AAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAATGTTGATACAAGgtgacttctc ... ttttttgcagGTATATGATGAAGACAGAC