1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGgtatacaatgacaggatctctgcagttctgacttttggttaaatttgttttcttcatgcctttgctttacagtgaaaattttgatctgtggtctgatgatcttcgatttacactatttctcatgttgttgctttgtactatgtag
species | Oryza sativa |
transcript | LOC_Os07g07000.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTCCTGATGAAGAG ACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAAEST: gi|58593226|gb|CF991534.1|CF991534
genomic: GTCCTGATGAAGAGgtatacaatg ... tactatgtagACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
EST: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG ACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAAEST: gi|58596499|gb|CK007027.1|CK007027
genomic: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGgtatacaatg ... tactatgtagACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
EST: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG ACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAAEST: gi|58679994|gb|CK068681.1|CK068681
genomic: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGgtatacaatg ... tactatgtagACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
EST: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAG ACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAAEST: gi|88964544|gb|CI069892.1|CI069892
genomic: TCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGgtatacaatg ... tactatgtagACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
EST: TAGTCGTCCTGATGAAGAG ACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
genomic: TAGTCGTCCTGATGAAGAGgtatacaatg ... tactatgtagACAGTTGACAATTTAATAGAGACTGGAAGAAGTGAGCAAATTTTCCAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGAGAGAAGCAATCCGGCAGGAGTATCGTGATGTCGTTGAAAGAAGGGTGTTTACAGTAACTGGTAGTCGTCCTGATGAAGAGgtatacaatgacaggatctctgcagttctgacttttggttaaatttgttttcttcatgcctttgctttacagtgaaaattttgatctgtggtctgatgatcttcgatttacactatttctcatgttgttgctttgtactatgtag
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA