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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGACACTCAGCATGTGCTGCCAAACTTGCAGCAGGGATATGTGCTGATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgcatatcatcttatatttgcaattctcgacctcttttttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcag

Basic information

species Oryza sativa
transcript LOC_Os07g06980.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06980.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G107309_T07 (Zea mays), 5'ss of exon 8
AAATGGACACTCAGCATGTGCTGCCAAACTTGCAGCAGGGATATGTGCTGATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgcatatcatcttatatttgcaattctcgacctcttt---tttgcacagtacacctagacacctgagagttattattttgatatactttgcatgttgatactgactgtgtctaccggagagcag
||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||| | ||| ||||||||| |    |     | || |||   | ||||||||   |||  |    ||| | |   |||||   |||| | | ||| |||||      || ||||   | | | |||
AAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATAGTATCTGGGCGTGTTCGCAATGGCTTTGCGCTGgtactgtacttatgatcttatatcttttttcacgaaactttttcattgtgcacagtgagcctgaaa---tga-aatgggtatttatgtatattcttcatattgat------tgggtctgttgaaaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300216046|gb|HO088672.1|HO088672
EST:     ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG                         GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: gi|218482428|gb|FG960539.1|FG960539
EST:     ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG                         GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTCTGGT
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: gi|12405058|gb|AU166659.1|AU166659
EST:     ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG                         GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
genomic: ATCTTGCTAACTTGATAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
EST: gi|58665950|gb|CK054636.1|CK054636
EST:     TAGTATCTGGGCGTGTTCGCAATGGATTTGCAATG                         GTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT
genomic: TAGTATCTGGGCGTGTTCGCAATGGATTTGCAATGgtactgtgca ... cggagagcagGTGAGACCTCCTGGCCATCATGCAGGGGTGAAACAAGCCATGGGTTTTTGT