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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAAgtaaggcatagatctatctacgtattcttttgtaacagggtactttttgacagctactgcagatatgttgattatggatatgttctgtgttttctagttttactaaaacaacttgttctaaaaataacttgcatgtgaacaaactacattattctcttcttgcag

Basic information

species Oryza sativa
transcript LOC_Os07g06820.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 4
GCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAAgtaaggcatagatctatctacgtattcttttgtaacagggtactttttgacagctactgcagatatgttgattatggatatgttctgtgttttctagttttacta-aaacaacttgttctaaaaataacttgcatgtgaacaaactacattattctcttcttgcag
|||||||||||||||||| ||||| | |||||||||||| | || || |||||||| ||||| ||||||||||||||||||||||      ||  |      |  |  |||  |||        | | || |  |  || |    || | ||  |||  ||| | | |   || | ||  |  || |||  | ||| ||| ||||     ||| ||| || |||||   | ||| | || ||||||
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTCCTTGTTTTTAAgtaagattacaattca-----atggttgtttccaac--------tatcgatacttgttg-aatcctgatcat-gtggtcatgctatttaccttttggtgcttgtataaattatttgatctcaaaacg-tatgcttgttaagaaactgtgtcattttattattgcag

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G035098_T01 (Zea mays), 5'ss of exon 6
GCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAAgtaaggcatagatctatctacgtattcttttgtaaca-gggtactttttgacagctactgcagatatgttgattatggatatgttctgtgttttctagttttacta-aaacaacttgttctaaaaataacttgcatgtgaacaaactacattattctcttcttgcag
|||||||||||||||||| ||||| | |||||||||||| | || || |||||||| ||||| ||||| ||||||||||||||||   || |   ||  |    || ||| | |  | || ||||| ||||   ||  | ||           | ||| | || | | |   || | ||  |  || |||  | ||| ||| ||||     ||| ||| || |||||   |  || | || ||||||
GCAAATGTCTATCATGCAACAAAGACGGATGGCCAGGAGCTTGCAATTAAAGTCTACAAAACCTCTGTTCTTGTTTTTAAgtaagat-taca---attcaatggttgtttcgaactatggatacttgttgaatcctgat-ca-----------tgtggttgtgctatttaccttttggtgcttgtataaattatttgatctcaaaacg-tgtgcttgttaagaaactgtgtcgttttattattgcag

upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S191_78V6.1 (Physcomitrella patens), 5'ss of exon 5
GCAAATGTCTATCATGCATCAAAGGCTGATGGCCAGGAGTTAGCGATCAAAGTCTATAAAACATCTGTCCTTGTTTTTAAgtaaggcatagatctatctacgtattcttttgtaacagggtactttttgacagctactgcagatatgttgattatggatatgttctgtgttttctagttttactaaaacaacttgttctaaaaataacttgcatgtgaacaaactacattattctcttcttgcag
|| ||||| ||||||||| | |   |    ||  ||||  ||||  | |||||||| ||||| ||| ||||||||||||||||||   |     |  |||  | |||  |  | |      | ||||    |  | | || | | |  | |||  |   ||| |    || ||  ||  |||  |                                                            
GCCAATGTTTATCATGCAACCACCTCCTCAGGAGAGGAACTAGCTGTGAAAGTCTACAAAACCTCTATCCTTGTTTTTAAgtaagcttt---ctttgctaaattttccgtctttattttccaattttcagtatttcccgctgttcttatcatttagccaatgct---ggtgttgaaggcttaggat-----------------------------------------------------------