1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccctctcaacgatatctattaaaaaggcaccgataatctgtcaaccccattattgtttattcatactgttcttaaatgtag
species | Oryza sativa |
transcript | LOC_Os06g50120.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|88964517|gb|CI055213.1|CI055213
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|88260688|gb|CI362981.1|CI362981
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: GAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATTCCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|86603159|gb|CI357523.1|CI357523
genomic: GAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTGGTAGGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGEST: gi|55413904|gb|CV726280.1|CV726280
genomic: ATTGGTA-GGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGG
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|86497255|gb|CI139888.1|CI139888
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|58675298|gb|CK063985.1|CK063985
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|86251814|gb|CI019006.1|CI019006
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAEST: gi|86427669|gb|CI072766.1|CI072766
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCACTGTTGCTGGAEST: gi|89185473|gb|CI051801.1|CI051801
genomic: ATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGA
EST: TTTCTCCATTTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAG GTTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGEST: gi|3107012|gb|D42744.1|D42744
genomic: TTTCTCCA-TTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagG-TTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGG
EST: TAAAAAGCCATCACAAATGGTGAAAGAAA-TGGTAGNCCG GTTGCAACTGAACGC-GCCATCATGGCCTTGCTTTTTCTCATTGTTGCTGG
genomic: TAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccc ... ttaaatgtagGTTGCAACTGATCGCTG-CATCATGGCCTTGCTTTTTCTCATTGTTGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGgtaagtaccctctcaacgatatctattaaaaaggcaccgataatctgtcaaccccattattgtttattcatactgttcttaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA