1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtattgtcttaggcactgttaaccgatgatagcttattttggatatttggactgactttttatttccacag
species | Oryza sativa |
transcript | LOC_Os06g47830.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGTTTTGGAAGCTCTGCAGCAACCAGATATAC- TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|88268950|gb|CI380248.1|CI380248
genomic: GGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|86493839|gb|CI136472.1|CI136472
genomic: CCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|88226781|gb|CI224766.1|CI224766
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: GAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|86488840|gb|CI131473.1|CI131473
genomic: GAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|87027991|gb|CI276347.1|CI276347
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: AAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|86493329|gb|CI135962.1|CI135962
genomic: AAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|86832680|gb|CI345097.1|CI345097
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATEST: gi|56158607|gb|AU101573.2|AU101573
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATEST: gi|86483717|gb|CI126350.1|CI126350
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
EST: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT TGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
genomic: CATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtat ... atttccacagTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTgtaagtgtattgtcttaggcactgttaaccgatgatagcttattttggatatttggactgactttttatttccacag
- - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG