Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAgtaagtaaaaagaagataaaatattctccttgtttcttcatcatgcttttcctggtggttaaggtgcgattaccactgttcag

Basic information

species Oryza sativa
transcript LOC_Os06g46570.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g46570.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G007185_T01 (Zea mays), 5'ss of exon 8
CAACACTCGGACAGATTTTATCGAATCATGTTAAGAAGCCCAGAGTATATATTGGATGCATGAAGTCCGGTCCCGTCTTATCTGACAAgtaagtaaaaagaagataaaatattc-tccttgtttctt-catcatgcttttcctggtggttaaggtgcgattaccactgttcag
||||||| ||| | || ||||| || ||| ||   |||||||| ||||| ||||||||||||||||| || || ||| | ||||||||||||  |||||||   |    | ||| |   | |||    || ||||||||| |  || ||||   || |||| |  |||| |||
CAACACTTGGAAATATCTTATCCAAACATATTTCAAAGCCCAGGGTATACATTGGATGCATGAAGTCTGGCCCTGTCCTCTCTGACAAgtaaagaaaaagagtctcttttgttcattagtatttaggacaacatgcttttgccagttgttacaatgagattgctgctgtccag