1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttcagttactctcgttttctaggtgcttgtaatctgattttatcccatcttgctgaagcaacttttcgtactccag
species | Oryza sativa |
transcript | LOC_Os06g45840.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|218500576|gb|FG960552.1|FG960552
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|86505486|gb|CI148119.1|CI148119
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|88216733|gb|CI216582.1|CI216582
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|38474825|gb|CF958958.1|CF958958
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|86539300|gb|CI179506.1|CI179506
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|27545921|gb|CA764047.2|CA764047
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|88253726|gb|CI352352.1|CI352352
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCACTTEST: gi|218489538|gb|FG952484.1|FG952484
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|218481447|gb|FG951027.1|FG951027
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGEST: gi|86491190|gb|CI133823.1|CI133823
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTG
EST: GATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|89189650|gb|CI049189.1|CI049189
genomic: GATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: AAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|29637643|gb|CB642652.1|CB642652
genomic: AAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|88473994|gb|CI411265.1|CI411265
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: CCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|86430932|gb|CI083355.1|CI083355
genomic: CCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|89177323|gb|CI250772.1|CI250772
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|88842228|gb|CI081484.1|CI081484
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: ATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|218495544|gb|FG956087.1|FG956087
genomic: ATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: TCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|58677571|gb|CK066258.1|CK066258
genomic: TCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|88224111|gb|CI223960.1|CI223960
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|86828394|gb|CI276939.1|CI276939
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: CCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|27334389|gb|CA882840.1|CA882840
genomic: CCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTTEST: gi|218494859|gb|FG953214.1|FG953214
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTCAGTT
EST: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCAT GGTAACAAGTGAGTGATGGAGAACTGCTTGTATGCGGACGAAGCTTC
genomic: GAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttc ... cgtactccagGGTAACAAGTGAGTGAGGGAGAACTGCTTGTATGCGGACGAAGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGCTTGCTGTCATCATGTAATTCTGGTGGGGACCCAATTAAGTCTGAAGGCATGGAAAATCTTGGATCTCCACAGAGTTGCCATCTCCCGTTCATgtaatacttcagttactctcgttttctaggtgcttgtaatctgattttatcccatcttgctgaagcaacttttcgtactccag
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