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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCATCTCAGCCAACTCATGATTTCCAAGCTCAATCAGTCACCATTCCACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttgtttcattatttttatgataacagacatcatgaaatatctagtcacactttatgatatcttgtgcatgtgaagaaaagctaaaagactaaa...

Basic information

species Oryza sativa
transcript LOC_Os06g30460.3
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599848|gb|CK010376.1|CK010376
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGGCAAAAAGGTTGCTTGAATCAAAGCAGAACACTCCACATTTATA
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTG-CAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATA
EST: gi|218488261|gb|FG947096.1|FG947096
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|218481815|gb|FG945396.1|FG945396
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|58692196|gb|CK080883.1|CK080883
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|27578288|gb|CB000983.1|CB000983
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|27578255|gb|CB000950.1|CB000950
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|58678110|gb|CK066797.1|CK066797
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
EST: gi|218482631|gb|FG947596.1|FG947596
EST:     CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAG                         GTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT
genomic: CACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttg ... tatattgtagGTGATTGCAAAAAGGTTGCTTGAATCAAAGCAGACCACTCCACATTTATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATCATCTCAGCCAACTCATGATTTCCAAGCTCAATCAGTCACCATTCCACAACAAAATGATGCATACGAAGATATCCCCAACAGTCAGATACGCAAGgtattctttgtttcattatttttatgataacagacatcatgaaatatctagtcacactttatgatatcttgtgcatgtgaagaaaagctaaaagactaaa

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