1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATGTATGTGAAGAGGACTCCTGAACTTAACAAATCTATACACATTTACTCTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGgtattgtcaaaaagcgccaccaagtatttttttctttagagatctatttagttaggaatgttgatacattcggatggacagggattctagtagaattttc...
species | Oryza sativa |
transcript | LOC_Os06g24704.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAG GAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATAEST: gi|29670228|gb|CB666503.1|CB666503
genomic: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGgtattgtcaa ... catctattagGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATA
EST: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAG GAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATAEST: gi|29665965|gb|CB662240.1|CB662240
genomic: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGgtattgtcaa ... catctattagGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATA
EST: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAG GAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGATAATCGCATA
genomic: CTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGgtattgtcaa ... catctattagGAGTGCCGTGAAGCTTGTGGTGGCCAAGGTTTGAAGACAGAGAATCGCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTATGTGAAGAGGACTCCTGAACTTAACAAATCTATACACATTTACTCTAGTGCTCTTAAAGCTACACTTACCTGGCAGAATATGACCACACTTCAGgtattgtcaaaaagcgccaccaagtatttttttctttagagatctatttagttaggaatgttgatacattcggatggacagggattctagtagaattttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccacc