1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCCTCTTGTTCTGCACATTAATTATATTCCTCGGCATTTTGATCCTGTTGCACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAGgtaattcattgttcagaactatacatcatagccagtcgtatctttgtaggcaaccctgatactaaatttgctgtgcag
species | Oryza sativa |
transcript | LOC_Os06g15700.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAG GGAATTGATTTAAAGCTGAAGCAGGTTTCTGCCATGGGTGTTTATGGTTTCEST: gi|33381221|gb|CF196564.1|CF196564
genomic: CACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAGgtaattcatt ... tgctgtgcagGGAATTGATTTAAAGCTGAAGCAGGTTTCTGCCATGGGTGTTTATGGTTTC
EST: CACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAG GGAATTGATTTAAAGCTGAAGCAGGTTTCTGCCATGGGTGTTTATGGTTTC
genomic: CACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAGgtaattcatt ... tgctgtgcagGGAATTGATTTAAAGCTGAAGCAGGTTTCTGCCATGGGTGTTTATGGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTCTTGTTCTGCACATTAATTATATTCCTCGGCATTTTGATCCTGTTGCACTTAGCAAAGGAAATTATGCAGAACTTCTCAACATTTTTCCATGGAAGgtaattcattgttcagaactatacatcatagccagtcgtatctttgtaggcaaccctgatactaaatttgctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG